Support for F# in the .NET Native compiler is in progress. The F# team, in collaboration with the .NET Native team, has posted an update on their GitHub which can be found here: https://github.com/Microsoft/visualfsharp/issues/1096.
Stacey Haffner | .NET Program Manager
@Yoram Bucks, how if your solution different from http://dotnetify.net/index/HelloWorld ?
WebAssembly + WebGL is the target of choice for CIL... Asking for HTML+JS will be soon outdated, we should be getting ahead of the curve... Microsoft... You better not f*ck this up for us... Start working on prototypes internal on this... We do not want to hear head of Microsoft saying again that MS miss the boat on new application model... Like it happens with Mobile Windows phones
Perhaps use WebGL as the rendering surface;... with asm.js as CIL